The half-decay distance is 10.0kb
|Gene||Coordinate||Visualize||RP score||RP rank|
Firstly, we separate genes in the differential expression list into up-regulated genes and down-regulated genes using logFoldChange. Then using FDR<=0.05 to get significantly differentially expressed genes and regard them as the true positive. We use RP score to predict whether a gene is significantly differentially expressed. Thus we can get the receiver operating characteristic curve and precision-recall curve and their AUC to show the association between peaks and differential expressed genes.